/*                                                                            */
/* CDDL HEADER START                                                          */
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/* All rights reserved.                                                       */
/*                                                                            */
/* CDDL HEADER END                                                            */
/*                                                                            */

/*                                                                            */
/* Copyright (c) 2013--2014, Regents of the University of Minnesota.          */
/* All rights reserved.                                                       */
/*                                                                            */
/* Contributors:                                                              */
/*    Ryan S. Elliott                                                         */
/*    Ellad B. Tadmor                                                         */
/*    Valeriu Smirichinski                                                    */
/*    Stephen M. Whalen                                                       */
/*                                                                            */

/*                                                                            */
/* Portions Copyright (c) <FILL_year>, <FILL_copyright_holder>.               */
/* All rights reserved.                                                       */
/*                                                                            */
/* Contributors:                                                              */
/*    <FILL_name>                                                             */
/*                                                                            */

/******************************************************************************/
/*                                                                            */
/*  <FILL_model_name>                                                         */
/*                                                                            */
/*  <FILL_model_class_name> pair potential model for <FILL_element_name>      */
/*                                                                            */
/*  Reference: <FILL_model_reference>                                         */
/*                                                                            */
/*  Language: C                                                               */
/*                                                                            */
/*  Release: This file is part of the kim-api-v1.6.3 package.                 */
/*                                                                            */
/******************************************************************************/


#include <stdlib.h>
#include <stdio.h>
#include <string.h>
#include <math.h>
#include "KIM_API_C.h"
#include "KIM_API_status.h"

/******************************************************************************/
/* Below are the definitions and values of all Model parameters               */
/******************************************************************************/
#define DIM 3       /* dimensionality of space */
#define SPECCODE 1  /* internal species code */
#define MODEL_CUTOFF <FILL_cutoff> /* cutoff radius in angstroms */
#define MODEL_CUTSQ  (MODEL_CUTOFF * MODEL_CUTOFF)
#define <FILL_aprameter_name> <FILL_parameter_value>


/* Define prototypes for model init */
/**/
int model_init(void* km);

/* Define prototypes for model reinit, compute, and destroy */
/* defined as static to avoid namespace clashes with other Models */
/**/
static int compute(void* km);
/**/
static void calc_phi(double r, double* phi);
static void calc_phi_dphi(double r, double* phi, double* dphi);


/* Calculate pair potential phi(r) */
static void calc_phi(double r, double* phi)
{
  /* local variables */
  /* <FILL_any_local_variable_definitions_here> */

  if (r > MODEL_CUTOFF)
  {
    /* Argument exceeds cutoff radius */
    *phi = 0.0;
  }
  else
  {
    *phi = <FILL_functional_form_of_phi(r)>;
  }

  return;
}

/* Calculate pair potential phi(r) and its derivative dphi(r) */
static void calc_phi_dphi(double r, double* phi, double* dphi)
{
  /* local variables */
  /* <FILL_any_local_variable_definitions_here> */

  if (r > MODEL_CUTOFF)
  {
    /* Argument exceeds cutoff radius */
    *phi  = 0.0;
    *dphi = 0.0;
  }
  else
  {
    *phi  = <FILL_functional_form_of_phi(r)>;
    *dphi = <FILL_functional_form_of_dphi(r)>;
  }

  return;
}

/* compute function */
static int compute(void* km)
{
  /* local variables */
  intptr_t* pkim = *((intptr_t**) km);
  double R;
  double Rsqij;
  double phi;
  double dphi;
  double dEidr = 0.0;
  double Rij[DIM];
  int ier;
  int i;
  int j;
  int jj;
  int k;
  int numOfPartNeigh;
  int currentPart;
  int comp_energy;
  int comp_force;
  int comp_particleEnergy;
  int comp_virial;
  int IterOrLoca;
  int HalfOrFull;
  int NBC;
  const char* NBCstr;
  int numberContrib;

  int* nParts;
  int* particleSpecies;
  double* Rij_list;
  double* coords;
  double* energy;
  double* force;
  double* particleEnergy;
  double* virial;
  int* neighListOfCurrentPart;
  double* boxSideLengths;
  int* numContrib;


  /* Determine neighbor list boundary condition (NBC) */
  /* and half versus full mode: */
  /*****************************
   * HalfOrFull = 1 -- Half
   *            = 2 -- Full
   *****************************/
  ier = KIM_API_get_NBC_method(pkim, &NBCstr);
  if (KIM_STATUS_OK > ier)
  {
    KIM_API_report_error(__LINE__, __FILE__, "KIM_API_get_NBC_method", ier);
    return ier;
  }
  if (!strcmp("NEIGH_RVEC_H",NBCstr))
  {
    NBC = 0;
    HalfOrFull = 1;
  }
  else if (!strcmp("NEIGH_PURE_H",NBCstr))
  {
    NBC = 1;
    HalfOrFull = 1;
  }
  else if (!strcmp("NEIGH_RVEC_F",NBCstr))
  {
    NBC = 0;
    HalfOrFull = 2;
  }
  else if (!strcmp("NEIGH_PURE_F",NBCstr))
  {
    NBC = 1;
    HalfOrFull = 2;
  }
  else if (!strcmp("MI_OPBC_H",NBCstr))
  {
    NBC = 2;
    HalfOrFull = 1;
  }
  else if (!strcmp("MI_OPBC_F",NBCstr))
  {
    NBC = 2;
    HalfOrFull = 2;
  }
  else if (!strcmp("CLUSTER",NBCstr))
  {
    NBC = 3;
    HalfOrFull = 1;
  }
  else
  {
    ier = KIM_STATUS_FAIL;
    KIM_API_report_error(__LINE__, __FILE__, "Unknown NBC method", ier);
    return ier;
  }

  /* determine neighbor list handling mode */
  if (NBC != 3)
  {
    /*****************************
     * IterOrLoca = 1 -- Iterator
     *            = 2 -- Locator
     *****************************/
    IterOrLoca = KIM_API_get_neigh_mode(pkim, &ier);
    if (KIM_STATUS_OK > ier)
    {
      KIM_API_report_error(__LINE__, __FILE__, "KIM_API_get_neigh_mode", ier);
      return ier;
    }
    if ((IterOrLoca != 1) && (IterOrLoca != 2))
    {
      printf("* ERROR: Unsupported IterOrLoca mode = %i\n", IterOrLoca);
      return KIM_STATUS_FAIL;
    }
  }
  else
  {
    IterOrLoca = 2;   /* for CLUSTER NBC */
  }

  /* check to see if we have been asked to compute the forces, */
  /* particleEnergy, energy and virial */
  KIM_API_getm_compute(pkim, &ier, 4*3,
                       "energy",         &comp_energy,         1,
                       "forces",         &comp_force,          1,
                       "particleEnergy", &comp_particleEnergy, 1,
                       "virial",         &comp_virial,         1);
  if (KIM_STATUS_OK > ier)
  {
    KIM_API_report_error(__LINE__, __FILE__, "KIM_API_getm_compute", ier);
    return ier;
  }

  /* unpack data from KIM object */
  KIM_API_getm_data(
      pkim, &ier, 9*3,
      "numberOfParticles",           &nParts,         1,
      "particleSpecies",             &particleSpecies,1,
      "coordinates",                 &coords,         1,
      "numberContributingParticles", &numContrib,     (HalfOrFull==1),
      "boxSideLengths",              &boxSideLengths, (NBC==2),
      "energy",                      &energy,         (comp_energy==1),
      "forces",                      &force,          (comp_force==1),
      "particleEnergy",              &particleEnergy, (comp_particleEnergy==1),
      "virial",                      &virial,         (comp_virial==1));
  if (KIM_STATUS_OK > ier)
  {
    KIM_API_report_error(__LINE__, __FILE__, "KIM_API_getm_data", ier);
    return ier;
  }

  if (HalfOrFull == 1)
  {
    if (3 != NBC) /* non-CLUSTER cases */
    {
      numberContrib = *numContrib;
    }
    else
    {
      numberContrib = *nParts;
    }
  }
  else
  { /* provide initialization even if not used */
    numberContrib = *nParts;
  }

  /* Check to be sure that the species are correct */
  /**/
  ier = KIM_STATUS_FAIL; /* assume an error */
  for (i = 0; i < *nParts; ++i)
  {
    if ( SPECCODE != particleSpecies[i])
    {
      KIM_API_report_error(__LINE__, __FILE__,
                           "Unexpected species detected", ier);
      return ier;
    }
  }
  ier = KIM_STATUS_OK; /* everything is ok */

  /* initialize potential energies, forces, and virial term */
  if (comp_particleEnergy)
  {
    for (i = 0; i < *nParts; ++i)
    {
      particleEnergy[i] = 0.0;
    }
  }
  if (comp_energy)
  {
    *energy = 0.0;
  }

  if (comp_force)
  {
    for (i = 0; i < *nParts; ++i)
    {
      for (k = 0; k < DIM; ++k)
      {
        force[i*DIM + k] = 0.0;
      }
    }
  }

  if (comp_virial)
  {
    for (i = 0; i < 6; ++i)
    {
      virial[i] = 0.0;
    }
  }

  /* Initialize neighbor handling for CLUSTER NBC */
  if (3 == NBC) /* CLUSTER */
  {
    neighListOfCurrentPart = (int *) malloc((*nParts)*sizeof(int));
  }

  /* Initialize neighbor handling for Iterator mode */

  if (1 == IterOrLoca)
  {
    ier = KIM_API_get_neigh(pkim, 0, 0, &currentPart, &numOfPartNeigh,
                            &neighListOfCurrentPart, &Rij_list);
    /* check for successful initialization */
    if (KIM_STATUS_NEIGH_ITER_INIT_OK != ier)
    {
      KIM_API_report_error(__LINE__, __FILE__, "KIM_API_get_neigh", ier);
      ier = KIM_STATUS_FAIL;
      return ier;
    }
  }

  /* Compute energy and forces */

  /* loop over particles and compute enregy and forces */
  i = -1;
  while( 1 )
  {

    /* Set up neighbor list for next particle for all NBC methods */
    if (1 == IterOrLoca) /* ITERATOR mode */
    {
      ier = KIM_API_get_neigh(pkim, 0, 1, &currentPart, &numOfPartNeigh,
                              &neighListOfCurrentPart, &Rij_list);
      if (KIM_STATUS_NEIGH_ITER_PAST_END == ier)
      {  /* the end of the list, terminate loop */
        break;
      }
      if (KIM_STATUS_OK > ier) /* some sort of problem, return */
      {
        KIM_API_report_error(__LINE__, __FILE__, "KIM_API_get_neigh", ier);
        return ier;
      }

      i = currentPart;
    }
    else
    {
      i++;
      if (*nParts <= i) /* incremented past end of list, terminate loop */
      {
        break;
      }

      if (3 == NBC)     /* CLUSTER NBC method */
      {
        numOfPartNeigh = *nParts - (i + 1);
        for (k = 0; k < numOfPartNeigh; ++k)
        {
          neighListOfCurrentPart[k] = i + k + 1;
        }
        ier = KIM_STATUS_OK;
      }
      else              /* All other NBCs */
      {
        ier = KIM_API_get_neigh(pkim, 1, i, &currentPart, &numOfPartNeigh,
                                &neighListOfCurrentPart, &Rij_list);
        if (KIM_STATUS_OK != ier) /* some sort of problem, return */
        {
          KIM_API_report_error(__LINE__, __FILE__, "KIM_API_get_neigh", ier);
          ier = KIM_STATUS_FAIL;
          return ier;
        }
      }
    }

    /* loop over the neighbors of particle i */
    for (jj = 0; jj < numOfPartNeigh; ++ jj)
    {

      j = neighListOfCurrentPart[jj]; /* get neighbor ID */

      /* compute relative position vector and squared distance */
      Rsqij = 0.0;
      for (k = 0; k < DIM; ++k)
      {
        if (0 != NBC) /* all methods except NEIGH_RVEC */
        {
          Rij[k] = coords[j*DIM + k] - coords[i*DIM + k];
        }
        else          /* NEIGH_RVEC_F method */
        {
          Rij[k] = Rij_list[jj*DIM + k];
        }

        /* apply periodic boundary conditions if required */
        if (2 == NBC)
        {
          if (abs(Rij[k]) > 0.5*boxSideLengths[k])
          {
            Rij[k] -= (Rij[k]/fabs(Rij[k]))*boxSideLengths[k];
          }
        }

        /* compute squared distance */
        Rsqij += Rij[k]*Rij[k];
      }

      /* compute energy and force */
      if (Rsqij < MODEL_CUTSQ) /* particles are interacting ? */
      {
        R = sqrt(Rsqij);
        if (comp_force || comp_virial)
        {
          /* compute pair potential and its derivative */
          calc_phi_dphi(R, &phi, &dphi);

          /* compute dEidr */
          if ((1 == HalfOrFull) && (j < numberContrib))
          {
            /* HALF mode -- double contribution */
            dEidr = dphi;
          }
          else
          {
            /* FULL mode -- regular contribution */
            dEidr = 0.5*dphi;
          }
        }
        else
        {
          /* compute just pair potential */
          calc_phi(R, &phi);
        }

        /* contribution to energy */
        if (comp_particleEnergy)
        {
          particleEnergy[i] += 0.5*phi;
          /* if half list add energy for the other particle in the pair */
          if ((1 == HalfOrFull) && (j < numberContrib))
          {
            particleEnergy[j] += 0.5*phi;
          }
        }
        if (comp_energy)
        {
          if ((1 == HalfOrFull) && (j < numberContrib))
          {
            /* Half mode -- add v to total energy */
            *energy += phi;
          }
          else
          {
            /* Full mode -- add half v to total energy */
            *energy += 0.5*phi;
          }
        }

        /* contribution to virial tensor */
        if (comp_virial)
        {
          /* virial(i,j) = r(i)*r(j)*(dV/dr)/r */
          virial[0] += Rij[0]*Rij[0]*dEidr/R;
          virial[1] += Rij[1]*Rij[1]*dEidr/R;
          virial[2] += Rij[2]*Rij[2]*dEidr/R;
          virial[3] += Rij[1]*Rij[2]*dEidr/R;
          virial[4] += Rij[0]*Rij[2]*dEidr/R;
          virial[5] += Rij[0]*Rij[1]*dEidr/R;
        }

        /* contribution to forces */
        if (comp_force)
        {
          for (k = 0; k < DIM; ++k)
          {
            force[i*DIM + k] += dEidr*Rij[k]/R; /* accumulate force on i */
            force[j*DIM + k] -= dEidr*Rij[k]/R; /* accumulate force on j */
          }
        }
      }
    } /* loop on jj */
  }    /* infinite while loop (terminated by break statements above */


  /* Free temporary storage */
  if (3 == NBC)
  {
    free(neighListOfCurrentPart);
  }

  /* everything is great */
  ier = KIM_STATUS_OK;
  return ier;
}

/* Initialization function */
int model_init(void *km)
{
  /* Local variables */
  intptr_t* pkim = *((intptr_t**) km);
  double* model_cutoff;
  int ier;

  /* store pointer to compute function in KIM object */
  ier = KIM_API_set_method(pkim, "compute", 1, (func_ptr) &compute);
  if (KIM_STATUS_OK > ier)
  {
    KIM_API_report_error(__LINE__, __FILE__, "KIM_API_set_method", ier);
    return ier;
  }

  /* store model cutoff in KIM object */
  model_cutoff = (double*) KIM_API_get_data(pkim, "cutoff", &ier);
  if (KIM_STATUS_OK > ier)
  {
    KIM_API_report_error(__LINE__, __FILE__, "KIM_API_get_data", ier);
    return ier;
  }
  *model_cutoff = MODEL_CUTOFF; /* cutoff distance in angstroms */

  ier = KIM_STATUS_OK;
  return ier;
}
